RnoEX6032545 @ rn6
Exon Skipping
Gene
ENSRNOG00000024824 | Col22a1
Description
collagen type XXII alpha 1 chain [Source:RGD Symbol;Acc:1309081]
Coordinates
chr7:113128917-113132917:-
Coord C1 exon
chr7:113132864-113132917
Coord A exon
chr7:113131452-113131505
Coord C2 exon
chr7:113128917-113128970
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTCTCTTGGACCAGGGA
3' ss Score
8.12
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGTTTACCTGGTGAGCTCGGCTTCCCGGGAAAACCTGGGCCTGCTGGGCATGTG
Seq A exon
GGACCACCTGGAAAGGATGGGGTGAATGGGCCTCCAGGCTTGCCTGGTTCCAAG
Seq C2 exon
GGAGAACCAGGGGACCCTGGCGAAAGTGGTGTGCCTGGAATGCCTGGACCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024824-'27-29,'27-27,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.0=100),PF0139113=Collagen=PU(18.4=77.8)
A:
PF0139113=Collagen=PD(16.5=77.8),PF0139113=Collagen=FE(22.4=100)
C2:
PF0139113=Collagen=FE(22.4=100),PF0139113=Collagen=PU(3.0=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTACCTGGTGAGCTCGG
R:
CCGAGGTCCAGGCATTCCAG
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]