MmuEX6057310 @ mm10
Exon Skipping
Gene
ENSMUSG00000005397 | Nid1
Description
nidogen 1 [Source:MGI Symbol;Acc:MGI:97342]
Coordinates
chr13:13486639-13490167:+
Coord C1 exon
chr13:13486639-13486764
Coord A exon
chr13:13489006-13489155
Coord C2 exon
chr13:13490045-13490167
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTCATTTCTTTGTTCTTAAGCTG
3' ss Score
6.14
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ATATTGATGAGTGTTCAGAGCAGCCTTCCCGCTGTGGGAACCATGCGGTCTGCAACAACCTCCCAGGAACCTTCCGCTGCGAGTGTGTAGAGGGCTACCACTTCTCAGACAGGGGAACATGTGTGG
Seq A exon
CTGCCGAGGACCAACGTCCCATCAACTACTGTGAAACTGGTCTCCACAACTGTGATATCCCCCAGCGAGCCCAGTGCATCTATATGGGTGGTTCCTCCTACACCTGCTCCTGTCTGCCTGGCTTCTCTGGGGATGGCAGAGCCTGCCGAG
Seq C2 exon
ACGTGGATGAATGCCAGCACAGCCGATGTCACCCCGATGCCTTCTGCTACAACACACCAGGCTCTTTCACATGTCAGTGCAAGCCTGGCTATCAGGGGGATGGCTTCCGATGCATGCCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005397-'12-29,'12-21,23-29=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF126622=cEGF=PU(81.8=35.3)
C2:
PF126622=cEGF=PD(13.6=7.1),PF129472=EGF_3=WD(100=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGTGTTCAGAGCAGCC
R:
CCGGGCATGCATCGGAAG
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types