BtaEX6104830 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007244 | NID1
Description
nidogen 1 [Source:HGNC Symbol;Acc:HGNC:7821]
Coordinates
chr28:8761073-8769245:-
Coord C1 exon
chr28:8769120-8769245
Coord A exon
chr28:8762587-8762736
Coord C2 exon
chr28:8761073-8761195
Length
150 bp
Sequences
Splice sites
3' ss Seq
TGTTAACTTTCTGTCTGAAGCTG
3' ss Score
6.72
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATATCGACGAATGTTCAGAGCAGCCCTCAGTGTGTGGCAATCACGCGATCTGCAATAACCACCCAGGAACCTTCCGCTGTGAGTGTGTGGAGGGCTACCAGTTTTCAGAGGCTGGAACATGTGTGG
Seq A exon
CTGCCGTGGGCCTGCGCCCCGTCAACCACTGCGAGACTGGCCTTCACGACTGTGACATCCCCCAGCGGGCCCGGTGCATCTACATGGGCGGCTCCTCCTACACCTGCTCCTGCCTCCCAGGCTTCTCTGGGGATGGCCGAGCCTGCCAAG
Seq C2 exon
ATGTGGATGAATGCCAGCCAAGCCGATGCCACCCCGATGCTTTCTGCTACAATACGCCAGGGTCCTTCACGTGCCGCTGCAAATCTGGTTACCAAGGAGACGGCTTCCATTGTGTGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007244-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF126622=cEGF=PU(81.8=35.3)
C2:
PF126622=cEGF=PD(13.6=7.1),PF129472=EGF_3=WD(100=81.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACGAATGTTCAGAGCAGC
R:
CTCCAGGCACACAATGGAAGC
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]