DreEX0003358 @ danRer10
Exon Skipping
Gene
ENSDARG00000103129 | CU207219.1
Description
NA
Coordinates
chr11:44315433-44323512:+
Coord C1 exon
chr11:44315433-44315570
Coord A exon
chr11:44318367-44318510
Coord C2 exon
chr11:44323387-44323512
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGTTGACGGTGTGTGTTTAGAAA
3' ss Score
5.76
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTGGAGTCCCGGAGCAGAATCCGTGTTTTACCGGTAGACACGGCTGTGACACTAATGCCGTCTGCCGGCCGGCGCAGGGGAAAGACTTCAGCTGTGAGTGCGCCGCTGGATTCTCTGGAGACGGACGCGTGTGTTACG
Seq A exon
AAACCGAGCGTCCTGTGGATCACTGTCAGAGAGGAACACACGACTGCGACGCTCCAGAAAGAGCCAGATGCAGATACACCGGCGCCTCATCCTACATCTGCGCATGTCTGACCGGCTTCACTGGAGATGGACGAGTCTGTCAAG
Seq C2 exon
ATATAGACGAGTGCCAGCCTGGTCGATGCCACAGTGATGCCGTCTGCTTCAACACTCAGGGCTCCTTCAGCTGCCAGTGTCGGCCCGGGTTTACTGGAGACGGCTTCAGCTGCACTCCTGGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103129_MULTIEX1-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=78.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF129472=EGF_3=WD(100=79.6),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCCCGGAGCAGAATC
R:
AGCTGAAGCCGTCTCCAGTAA
Band lengths:
248-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]