MmuEX6058585 @ mm10
Exon Skipping
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55401127-55403100:+
Coord C1 exon
chr13:55401127-55401270
Coord A exon
chr13:55402668-55402779
Coord C2 exon
chr13:55402905-55403100
Length
112 bp
Sequences
Splice sites
3' ss Seq
AGAGGTTCCTCTTTCACCAGTGT
3' ss Score
4.37
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGAAGGTGGCTGGGGACATCTTCAAGGACAATGCCATCCTATCCAACCCAGTGGCAGGGCTGGTGGTGGGGATCCTGGTGACAGTTCTGGTGCAGAGTTCCAGTACCTCTACATCCATCATTGTCAGCATGGTCTCCTCCGGCT
Seq A exon
TGTTGGAGGTGAGCTCCGCCATTCCGATCATCATGGGCTCCAACATCGGAACCTCTGTCACCAACACCATTGTGGCCCTGATGCAGGCAGGGGACAGGACTGACTTCAGGCG
Seq C2 exon
GGCTTTTGCAGGGGCGACCGTGCATGACTGTTTTAACTGGCTGTCTGTTCTGGTCCTACTGCCCCTGGAGGCTGCCACGGGCTACCTACACCATGTCACCGGGCTTGTGGTTGCTTCCTTCAACATCCGAGGTGGCCGTGATGCCCCCGACCTTCTCAAAGTCATCACAGAGCCCTTCACAAGACTCATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490-'6-18,'6-17,10-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(33.1=100)
A:
PF0269010=Na_Pi_cotrans=FE(25.5=100)
C2:
PF0269010=Na_Pi_cotrans=PD(29.0=63.6)
Main Skipping Isoform:
ENSMUST00000057167fB16899
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGGGGACATCTTCAAG
R:
CCCGGTGACATGGTGTAGGTA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types