RnoEX6053063 @ rn6
Exon Skipping
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9759168-9761381:-
Coord C1 exon
chr17:9761238-9761381
Coord A exon
chr17:9759488-9759599
Coord C2 exon
chr17:9759168-9759363
Length
112 bp
Sequences
Splice sites
3' ss Seq
AGAGGTTCCTCTTCCGCCAGTGT
3' ss Score
3.93
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGAAAGTGGCTGGGGACATCTTCAAGGACAATGCCATCCTGTCCAACCCAGTGGCAGGGCTGGTGGTGGGAATCCTGGTGACAGTTCTGGTGCAGAGCTCCAGCACCTCGACATCCATCATTGTCAGCATGGTCTCCTCTGGCT
Seq A exon
TGTTGGAGGTGAGCTCCGCCATTCCGATAATCATGGGCTCCAACATCGGGACCTCTGTCACCAACACCATTGTGGCCCTGATGCAGGCGGGGGACAGGACTGACTTCAGGCG
Seq C2 exon
GGCTTTTGCAGGGGCAACAGTGCATGACTGCTTTAACTGGCTGTCTGTTCTGGTCCTGCTGCCCCTGGAGGCTGCCACGGGCTACCTGCACCACGTCACCGGGCTTGTGGTTGCCTCCTTCAACATCCGTGGTGGCCGTGATGCCCCTGACCTTCTCAAGGTTATCACAGAGCCCTTCACAAAGCTTATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262-'4-10,'4-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(33.1=100)
A:
PF0269010=Na_Pi_cotrans=FE(25.5=100)
C2:
PF0269010=Na_Pi_cotrans=PD(29.0=63.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGCCATCCTGTCCAACC
R:
CACCACGGATGTTGAAGGAGG
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]