MmuEX6058594 @ mm9
Exon Skipping
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55522886-55523438:-
Coord C1 exon
chr13:55523328-55523438
Coord A exon
chr13:55523114-55523245
Coord C2 exon
chr13:55522886-55522990
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGACTTCCTTGTGTCCCCAGAGA
3' ss Score
10.43
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ACCATTGCAGCAAACACAACCCGTGCCACAAAGGAGGGACATGTATCAACACCCCCAATGGGCCACACTGTCTCTGCCCTGAACACCTCACTGGGAAACATTGCCAGAAAG
Seq A exon
AGAAATGCTTTGAGCCTCAGCTTCTCAAGTTCTTCCACGAGAATGAGCTATGGTTTAGAACGGGGCCAGGAGGTGTGGCCAGGTGCGAGTGCAAAGGTTCTGAGGCTCACTGCAAGCCGGTGGCCAGCCAGG
Seq C2 exon
CCTGCAGCATCAATCCGTGCCTTAATGGGGGCAGCTGCCTCCTCGTGGAGGACCACCCACTGTGCCGTTGCCCTACAGGCTACACTGGATATTTTTGCGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=84.2)
A:
PF0003913=fn1=WD(100=80.0)
C2:
PF0000822=EGF=WD(100=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGCAGCAAACACAACCC
R:
TCGCAAAAATATCCAGTGTAGCCT
Band lengths:
210-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: