RnoEX6053058 @ rn6
Exon Skipping
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9740279-9740802:+
Coord C1 exon
chr17:9740279-9740389
Coord A exon
chr17:9740464-9740595
Coord C2 exon
chr17:9740698-9740802
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCCTTTTGTCCCCAGAGA
3' ss Score
10.69
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ACCATTGCAGCAAACACAGCCCCTGCCACAAAGGAGGGACGTGTGTCAACACCCCCAACGGCCCGCACTGTCTCTGCCCTGAACACCTCACCGGGAAACATTGCCAGAGAG
Seq A exon
AGAAATGCTTTGAGTCTCAGCTCCTCAAGTTCTTCCATGAGAATGAGATATGGTTTAGAACTGGGCCAGGAGGTGTGGCCAGGTGCCAGTGCAAAGGTCCTCAGGCTGTTTGCAAGCTGCTGACCAGTCAGG
Seq C2 exon
TTTGCAGGGTCAATCCGTGCCTTAATGGAGGCACCTGCCTCCTCGTGGAGGACCACCGACTGTGCCACTGCCCTGCAGGCTATGCCGGACCTTTTTGCGACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139-'5-9,'5-7,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=84.2)
A:
PF0003913=fn1=WD(100=80.0)
C2:
PF0000822=EGF=WD(100=86.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGCAGCAAACACAGCC
R:
TCGCAAAAAGGTCCGGCATAG
Band lengths:
210-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]