MmuEX6059540 @ mm10
Exon Skipping
Gene
ENSMUSG00000034488 | Edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:MGI Symbol;Acc:MGI:1329025]
Coordinates
chr13:89042432-89131855:+
Coord C1 exon
chr13:89042432-89042560
Coord A exon
chr13:89094551-89094664
Coord C2 exon
chr13:89131674-89131855
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTCATCAGATA
3' ss Score
10.19
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GTCCCTGCATCCCTAACCCATGCCATAACGGAGGAACCTGTGAGATAAGCGAAGCCTATCGAGGAGACACATTCATAGGCTATGTTTGTAAATGTCCTCGGGGATTTAATGGGATTCACTGTCAGCACA
Seq A exon
ATATAAATGAATGTGAAGCTGAGCCTTGCAGAAATGGCGGAATATGTACCGACCTTGTTGCTAACTACTCTTGTGAATGCCCAGGAGAATTTATGGGACGAAATTGTCAATATA
Seq C2 exon
AATGCTCTGGGCCATTGGGAATCGAAGGTGGGATCATATCTAATCAGCAAATCACAGCTTCATCTACTCACCGAGCTCTTTTTGGACTCCAGAAGTGGTATCCCTACTATGCTCGACTTAATAAGAAGGGCCTTATAAATGCCTGGACAGCTGCTGAAAATGACAGATGGCCATGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034488-'20-16,'20-14,22-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.4),PF0000822=EGF=PU(7.9=6.8)
A:
PF0000822=EGF=PD(89.5=87.2)
C2:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAACCTGTGAGATAAGCG
R:
CAGCAGCTGTCCAGGCATTTA
Band lengths:
256-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types