MmuEX0016245 @ mm10
Exon Skipping
Gene
ENSMUSG00000034488 | Edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:MGI Symbol;Acc:MGI:1329025]
Coordinates
chr13:88977755-89094664:+
Coord C1 exon
chr13:88977755-88977784
Coord A exon
chr13:89042432-89042560
Coord C2 exon
chr13:89094551-89094664
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACTTCTGTCTGTCTTTCAGGTC
3' ss Score
12.65
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CATCAGATGAAGAAAAGCCTACTTCAGCAG
Seq A exon
GTCCCTGCATCCCTAACCCATGCCATAACGGAGGAACCTGTGAGATAAGCGAAGCCTATCGAGGAGACACATTCATAGGCTATGTTTGTAAATGTCCTCGGGGATTTAATGGGATTCACTGTCAGCACA
Seq C2 exon
ATATAAATGAATGTGAAGCTGAGCCTTGCAGAAATGGCGGAATATGTACCGACCTTGTTGCTAACTACTCTTGTGAATGCCCAGGAGAATTTATGGGACGAAATTGTCAATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034488-'16-14,'16-10,20-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=86.4),PF0000822=EGF=PU(7.9=6.8)
C2:
PF0000822=EGF=PD(89.5=87.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGATGAAGAAAAGCCTACTTCA
R:
TGACAATTTCGTCCCATAAATTCTCC
Band lengths:
139-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types