RnoEX0030807 @ rn6
Exon Skipping
Gene
ENSRNOG00000033064 | Edil3
Description
EGF like repeats and discoidin domains 3 [Source:RGD Symbol;Acc:1588887]
Coordinates
chr2:17778871-17886287:+
Coord C1 exon
chr2:17778871-17778900
Coord A exon
chr2:17835261-17835389
Coord C2 exon
chr2:17886174-17886287
Length
129 bp
Sequences
Splice sites
3' ss Seq
CATTTGTCTCTGTCTTTCAGGTC
3' ss Score
12.86
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CATCAGATGAAGAAAAGCCTACTTCAGCAG
Seq A exon
GTCCCTGCATCCCCAATCCATGCCATAATGGAGGAACTTGTGAGATAAGTGAAGCATATCGGGGAGACACATTCATAGACTATGTTTGTAAATGTCCCCAGGGATTTAATGGGATTCACTGTCAGCACA
Seq C2 exon
ATATAAATGAATGTGAAGCTGAGCCTTGCAGAAATGGTGGAATATGTACGGACCTTGTTGCCAACTACTCCTGTGAATGCCCAGGAGAATTTATGGGACGGAATTGTCAATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033064_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=86.4),PF0000822=EGF=PU(7.9=6.8)
C2:
PF0000822=EGF=PD(89.5=87.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATGAAGAAAAGCCTACTTCAGC
R:
TTGACAATTCCGTCCCATAAATTCT
Band lengths:
138-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]