MmuEX6061124 @ mm10
Exon Skipping
Gene
ENSMUSG00000075370 | Igll1
Description
immunoglobulin lambda-like polypeptide 1 [Source:MGI Symbol;Acc:MGI:96529]
Coordinates
chr16:16860671-16863817:-
Coord C1 exon
chr16:16863696-16863817
Coord A exon
chr16:16862429-16862544
Coord C2 exon
chr16:16860671-16861134
Length
116 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGACTCACCCAACAGGCT
3' ss Score
8.37
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TTGGGTCTAGTGGATGGTGTCCACCACATACTTTCCCCAAGCTCAGCAGAAAGGAGCAGAGCTGTGGGCCCTGGAGCTTCAGTGGGAAGCAACAGGCCTAGCCTATGGGCCCTTCCCGGCAG
Seq A exon
GCTCCTGTTCCAGATCATCCCACGGGGAGCAGGTCCCAGGTGCTCGCCCCATAGGCTTCCATCTAAGCCCCAGTTTTGGTATGTCTTTGGTGGTGGGACCCAGCTCACAATCCTAG
Seq C2 exon
GTCAGCCCAAGTCTGACCCCTTGGTCACTCTGTTCCTGCCTTCCTTAAAGAATCTTCAGGCCAACAAGGCCACACTAGTGTGTTTGGTGAGCGAATTCTACCCAGGTACTTTGGTGGTGGACTGGAAGGTAGATGGGGTCCCTGTCACTCAGGGTGTAGAGACAACCCAACCCTCCAAACAGACCAACAACAAATACATGGTCAGCAGCTACCTGACACTGATATCTGACCAGTGGATGCCTCACAGTAGATACAGCTGCCGGGTCACTCATGAAGGAAACACTGTGGAGAAGAGTGTGTCACCTGCTGAGTGTTCTTAGACCACAATCCTCCCTGAAGCCTCAGGGGCCTGGATCTGAAGTGCCAGAAAAAGTTGTTTTTTGTTTTGTTTTTTGTTTTTTTTCCCATTAACCATCTCACTGTCTTTCCTGTGCCTAATACTCAATAAATATCTTACCACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075370_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.025 C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0765410=C1-set=WD(100=80.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAAGGAGCAGAGCTGTGG
R:
TTGGAGGGTTGGGTTGTCTCT
Band lengths:
254-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types