MmuEX6064159 @ mm10
Exon Skipping
Gene
ENSMUSG00000058192 | Zfp846
Description
zinc finger protein 846 [Source:MGI Symbol;Acc:MGI:1924012]
Coordinates
chr9:20587835-20590884:+
Coord C1 exon
chr9:20587835-20587923
Coord A exon
chr9:20588509-20588635
Coord C2 exon
chr9:20590813-20590884
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAGTGTGTGTGTGATATTAGGTC
3' ss Score
4.26
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAACTCTGTGTAGGGACTCAGACCCCATTCTTGAAAAAAAGAGGAAGGTAGAAAAGATGGTGGCTGATTGCCTGACAAATTGTTACCAG
Seq A exon
GTCTCAGTAACTTTTGATGATGTGGCTGTGGACTTCACCCAAGAAGAATGGATTTTATTGGATCAAGCTCACAGAGACCTCTACAGAGAGGTGATGCTGGAGAACTACCAGAACCTGGCCTCAGCAG
Seq C2 exon
GATGTGAGGTCATCAAACCCAGTCTGATCTCCTGGTTGGAAGAAGAGGATTTGCACAGAGAAGATCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058192-'2-7,'2-4,5-7=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTAGGGACTCAGACCCC
R:
TGGAGATCTTCTCTGTGCAAATCC
Band lengths:
154-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types