MmuEX6067740 @ mm9
Exon Skipping
Gene
ENSMUSG00000032425 | Zfp949
Description
zinc finger protein 949 [Source:MGI Symbol;Acc:MGI:1918890]
Coordinates
chr9:88449214-88462438:+
Coord C1 exon
chr9:88449214-88449382
Coord A exon
chr9:88461997-88462123
Coord C2 exon
chr9:88462346-88462438
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAGAAATGTGCTGTTACAGGAG
3' ss Score
2.66
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
CTAATTGCACAGTGTTTTGAGTGGAGAATCTAGGACCAAGCCATGAATATCCTCTCACTCTCATGATTATACGATTCTCCTTCTTTCGAGTGTATCCCAGTATCCTCTGCGTGTTTCCAGGGGCAAAACCAAAACCAAGCAACTTACAAACATCATGAATGAATATGTG
Seq A exon
GAGTTGGTGTCTTTTGAGGACGTCACTGTGAAGTTCACCTGGGAGGAGTGGCAGAATCTCAACGACGCTCAGAAGATGCTGTACAGGAGTGTGATGCTGGAGACATATAATAGCCTGCTGTCACTGG
Seq C2 exon
GGCAATGCATCCCTAAACCTGAGTTGATCTTTAAATTGGAACAGGGAGAGGAGCCATGGACAGCAGAAGAACCTGCAAACAAGACTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032425-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.092
Domain overlap (PFAM):
C1:
PF112193=DUF3014=PU(9.5=80.0)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACAGTGTTTTGAGTGGAGA
R:
TGGCAGAGTCTTGTTTGCAGG
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: