MmuEX6068420 @ mm10
Exon Skipping
Gene
ENSMUSG00000032572 | Col6a4
Description
collagen, type VI, alpha 4 [Source:MGI Symbol;Acc:MGI:1915803]
Coordinates
chr9:106066652-106072558:-
Coord C1 exon
chr9:106071914-106072558
Coord A exon
chr9:106067847-106068392
Coord C2 exon
chr9:106066652-106067206
Length
546 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTTCTCATTGGCCAGGCT
3' ss Score
4.01
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
CTTGGTCTTTTACAGTGAGAAACCAAGGCTGGAGTTTTCCCTGGATATGTATCAAAGCGCTGCCCAAGTCTTACGCCATCTGGACAGGTTAACTTTCCGAGCAAGAAGAGGAAGGGCGAAGGCAGGTGCTGCTTTAGACTTCCTGAGGAAAGAAGTTTTCCTTCCAGAGAAGGGCAGCCGGCCCCATCGGGGCGTACAGCAGATAGCTGTGGTCATCATAGAAAGTCCTTCTCTAGACAATGTGTCTACACCTGCTTCCTACCTTCGCAGGGCGGGGGTCACCATCTATGCAGCGGGCACCCAGCCTGCCTCTGAGAGTAAGGACCTGGAGAAGATTGTCACATACCCTCCCTGGAAGCACGCCATCCGCCTAGAGTCCTTTCTGCAACTCAGTGTTGTAGGAAACAAACTTAAAAAGAAGCTCTGCCCTGAGATGTTGAGCGGAATGCCTCCTCTGATGAGCTTTATTCCAGAAAGCACACGACAAAGCACACAGGAAG
Seq A exon
GCTGCGAGAGTGTGGAGAAGGCAGACATTTACTTCCTTATTGATGGATCTGGCAGCATCAAACCCAACGACTTCATTGAAATGAAGGACTTCATGAAGGAGGTGATAAAGATGTTCCACATTGGGCCCGACAGAGTACGATTTGGAGTCGTTCAGTACTCAGACAAAATTATAAGCCAGTTTTTCCTCACCCAGTATGCCAGCATGGCAGGACTGAGCGCAGCCATTGACAACATCCAACAGGTGGGAGGTGGTACCACCACTGGCAAGGCCTTAAGCAAAATGGTACCAGTCTTCCAAAACACTGCCAGAATCGACGTTGCCCGATACCTCATTGTCATCACTGATGGTCAGTCTACCGACCCGGTGGCTGAGGCTGCGCAGGGATTGAGGGACATCGGAGTCAATATTTATGCCATTGGAGTAAGGGATGCTAATACGACTGAGCTTGAGGAAATAGCAAGCAAAAAGATGTTTTTCATATATGAGTTTGATTCCTTGAAGTCCATCCACCAGGAAGTCATTCGGGACATCTGCTCCTCAGAGA
Seq C2 exon
ACTGTAAGAGCCAGAAAGCTGACATCATCTTCTTGATTGATGGCTCAGAATCCATCGCTCCTAAAGACTTTGAAAAGATGAAGGACTTCATGGAGAGGATGGTGAACCAGTCTAATATCGGTGCTGATGAAATTCAGATTGGCCTTCTGCAGTTCAGCTCCAATCCCCAGGAAGAATTCAGGCTTAACCGGTACTCCTCAAAGGTGGACATGTGCAGAGCCATCTTGAGTGTCCAACAGATGAGTGATGGTACCCATACTGGGAAAGCCTTGAATTTCACTCTGCCCTTTTTTGACAGTTCAAGAGGAGGGAGACCCAGAGTTCATCAGTATTTGATTGTGATCACCGACGGGGTCTCCCAGGATAATGTAGCTCCCCCAGCCAAAGCCCTCAGGGACAGAAACATAATTATTTTTGCTATCGGGGTGGGAAATGTTCAAAGAGCCCAGCTTTTGGAGATCACCAATGACCAGGACAAAGTATTCCAGGAGGAAAATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032572-'11-12,'11-11,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.005 C2=0.011
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=83.8)
A:
PF0009223=VWA=WD(100=92.3)
C2:
PF0009223=VWA=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGACAAAGCACACAGGAA
R:
CTCTGGGTCTCCCTCCTCTTG
Band lengths:
343-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types