DreEX6042039 @ danRer10
Exon Skipping
Gene
ENSDARG00000079752 | col6a6
Description
collagen, type VI, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-041111-303]
Coordinates
chr16:36724796-36731154:+
Coord C1 exon
chr16:36724796-36725413
Coord A exon
chr16:36727610-36728167
Coord C2 exon
chr16:36730594-36731154
Length
558 bp
Sequences
Splice sites
3' ss Seq
TATTTAATCCTTACCTTCAGGAT
3' ss Score
9.46
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GGTGAACTCTGACAGCGTGAGGGTGGGAATGGTGCTTTATAACGACAGACCCAGCGCCGAATTCTACCTGGACACGTTTGCTAACAAGAACGATATTATGAACTACATTAAAATCATTCCATACAGAGGTGGAGGAACAGCAACCGGTGCAGCCCTAAAGTTCGCCCAGAACAATCTGTTCACTCAGAAGAGGGGGAGCCGGAAAGCTCTGGGTGTTAAGCAGATTGCCATCGTCATGACTGATGGCGAGTCCGAGGATGATGTCACGACCACAGCTGCTGAACTGAGGCGCTCAGGAGTCACCGTGTATGCCCTCGGAGTGAAGAACGCTAGTGTGGAGGAGCTCAAAAAAATCGGATCCTACCCAGAACATGAGTTTGTGTTCAATGTGGGAAGCTTCCTGATGCTTTCATCTCTGGAGAAGAGCCTCAGAAAGAGTCTGTGTAAGGTGGTGGTCAACAGACGATTTGACAAGAACAACAGATTGCTCCTAAAACAAG
Seq A exon
GATGTGTGAACACAGAGGAAGCAGACATTTATTTCCTGTTGGACAACTCTGGCAGCACTCGCGCCGACTTTGAAGATGTGAAGAAATTTATCTTAGGCTCCCTTCAGTTATTCAACATTGGACCAAATCGAGTTCGTGTAGGAGTTGTAAAAGTCGACCGCAATCCCACTCTTCAATTCAGCCTGACAGAGCACAAAAACAGAGCTTCTTTTGAAGCAGCCGTGAGGGGAATCAGTCAGCCTGTTGGAGGCTCAGAGAAAGGCAAAGCACTAAAATATGTGGCCAGTCTCTTTAATCAGGCTAAAGCATCCCGTCCAGCTAAAGTGCAGGAGATTCTCATTGTCATTACTGATAAGACGTCTCAAGATGATGTGGGGGATCCAGCAGAAGAGCTGAGGATTCAAGGGGTTTCGGTTTATGCCATTGGAGTAAAGGATGCCAGCCAGGATGAGCTCTTGAAGATGACGGCTGATGAAACTAAGGATTTCTATGTGACCAACTACGATGCCCTGAATGTTCTCAAGCGAGAAATTGTCACAGATATTTGCTCTCAAGAGG
Seq C2 exon
CCTGCAAGAACAAAGTGGCAGATATCATGTTTTTGATTGATGGTTCTTCCAGCATTTATGGCCCAGACTTTACATCAATGAAGACGTTTATTACCAAAGTTGTAAATGGGACCATCATCGGAGAAGACAGTGTGCATGTTGGTGTTGTCCAGTTCAGCAATAACCCACAGGAGCAATTTCCCCTGAACAGGTACTTTGACCAAAATGAATTAGAAGAAGCAATCGACGGCATTGAACAGTTAACAGGAGACACATACACAGGGAAAGCACTCTCGTTTATTTCAAAGTATTTTGATGCATCTAATGGCGGTCGGCCAGACGTTCCACAGTTCCTGGTGGTTATTACAGATGGAGAAGCTCATGATGCTGTCGCCGTACCTGCAAAGGCCATCAGAGACAAGGGTGTCACCATCTTCTCCATAGGTGTGGCCAGTGTAAACACCACACAGCTATGGGAGATCAGTGGTACTCAAGATAAAGTGTATGTGCAGAGGGATTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079752-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.016 C2=0.005
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=85.0)
A:
PF0009223=VWA=WD(100=93.5)
C2:
PF0009223=VWA=WD(100=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATGCCCTCGGAGTGAAGA
R:
TGGACAACACCAACATGCACA
Band lengths:
346-904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]