MmuEX6073991 @ mm9
Exon Skipping
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127301619-127305475:+
Coord C1 exon
chr3:127301619-127301733
Coord A exon
chr3:127303898-127304157
Coord C2 exon
chr3:127305316-127305475
Length
260 bp
Sequences
Splice sites
3' ss Seq
CTGATGTTCTTTTTTACTAGGTC
3' ss Score
10.14
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TCACAGTCCATGCATTGTTGGTTTGTAATGCCAGCACAGAGCTGACAACTCTACAGAACATTCAGGACTACTTTAACCCAGCTGCTCTTCCACTAATGCCATACCTGCTAGCAAT
Seq A exon
GTCTCAGTCAGCTACAGTTAGCAGTAAAAATATCAGTAAAAGAAAATTTATCCCACCAGCCATTACAAGCATTAAAACAAAAACGGAACTCCACCTTGGAGCGACCCTGCAGTTAGCTAGGGAGTTGATTAACGTACACAGGTTGAACAAGGACCAAGCTACAGCACTAATTCAGATAGCTCAAATGATGGCATCCCAAGGAAGTGATGAAGATGCCCTGGAGCCCTTCGGCCATTCCCTGCCTATCACAGTCATTCATG
Seq C2 exon
GTGTTTTTGGAGCAGGCAAAAGCTATTTGCTGGCTGTGGTGATTCTGTTCTTGGTAGAGCTGTTTGAAAAGTGTGATTCTGGAACAGTTGGCAATGCAAGGCCATGGAAAGTCCTCGTTTCTTCTTCCACTAACGTAGCTGTTGACAGAGTGCTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'27-19,'27-18,28-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(17.1=45.5)
C2:
PF130861=AAA_11=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGTCCATGCATTGTTGGT
R:
GCACTCTGTCAACAGCTACGT
Band lengths:
268-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: