GgaEX6035137 @ galGal3
Exon Skipping
Gene
ENSGALG00000012068 | C4orf21
Description
NA
Coordinates
chr4:58680007-58682474:+
Coord C1 exon
chr4:58680007-58680121
Coord A exon
chr4:58681070-58681329
Coord C2 exon
chr4:58682315-58682474
Length
260 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTACATTTTTCTTAGGAA
3' ss Score
8.03
5' ss Seq
ATGGTATAT
5' ss Score
3.91
Exon sequences
Seq C1 exon
CATCAGTTCATGCCTTGCTAGTTTGTAATGCCAGTGGTGAGCTTATATCCTTAAGAAATATGGAAGAATACTTCAACCCATCTACTTTACCACTAATACCGTATCTACTAAAAAT
Seq A exon
GAATTCTGATTCTGAAAAATCAACTAGAAGAATCAACAAAAGAAAATTTATTCCACCTGCCATGAGCCTGGTAGGCAAAAAGACCTATGGATCTGTCAGCACTGAAGTGGCAATGGAACTAGCTGAAAAGATGATCCTGACGTTCTCATTGAATCCAGATCAAGCTATGTCTCTGATTCACATAGCTCAGATGATGACCTCACATGAAAATATGAAACCAGCGGAAGAACATCAGATTTTCCCTATCACAATCATACATG
Seq C2 exon
GTGTTTTTGGAGCTGGAAAGAGCTTTTTGCTGTCTGTTGTGATCTTGTTCCTGGTCCAGCTCTTTGAAAGCAGTGAAGCTAAGGAGGGTGCAGAGCTAGCTCCATGGAAACTTCTGATTGCTTCTTCTACTAATGTTGCTGTTGACAGGATATTGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012068-'8-10,'8-8,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF130861=AAA_11=PU(16.4=43.2)
C2:
PF130861=AAA_11=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTCATGCCTTGCTAGTTTGT
R:
ACAGCAATATCCTGTCAACAGCA
Band lengths:
272-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]