MmuEX6075343 @ mm9
Exon Skipping
Gene
ENSMUSG00000051977 | Prdm9
Description
PR domain containing 9 [Source:MGI Symbol;Acc:MGI:2384854]
Coordinates
chr17:15699778-15701304:-
Coord C1 exon
chr17:15701200-15701304
Coord A exon
chr17:15700185-15700295
Coord C2 exon
chr17:15699778-15699901
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGTTACCTCTTCATCCATAGGAC
3' ss Score
8.98
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
CTCCTCAGAGGGACGAACGCCGGCGGTGGCCTCAGAGCCGCGGGATTCTGGACCATGAGTGCAGGCGAAACCTTCAGGACCAGCGAGGCTTTCTAGGCTCAGCCC
Seq A exon
GACCATAGGACCCTGGACCTCTCCAGTGAAATGTCCTGCACCATGAACACCAACAAGCTGGAAGAAAATAGTCCTGAAGAAGATACAGGGAAATTCGAGTGGAAACCCAAG
Seq C2 exon
GTCAAAGATGAATTCAAAGACATTTCCATATACTTCTCCAAAGAAGAATGGGCAGAGATGGGAGAGTGGGAGAAAATTCGCTATAGAAATGTGAAAAGGAACTATAAAATGCTGATTTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051977-'0-4,'0-1,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.858 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAGAGGGACGAACGC
R:
TCAGCATTTTATAGTTCCTTTTCACA
Band lengths:
220-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: