MmuEX6075343 @ mm10
Exon Skipping
Gene
ENSMUSG00000051977 | Prdm9
Description
PR domain containing 9 [Source:MGI Symbol;Acc:MGI:2384854]
Coordinates
chr17:15562814-15564340:-
Coord C1 exon
chr17:15564236-15564340
Coord A exon
chr17:15563221-15563331
Coord C2 exon
chr17:15562814-15562937
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGTTACCTCTTCATCCATAGGAC
3' ss Score
8.98
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
CTCCTCAGAGGGACGAACGCCGGCGGTGGCCTCAGAGCCGCGGGATTCTGGACCATGAGTGCAGGCGAAACCTTCAGGACCAGCGAGGCTTTCTAGGCTCAGCCC
Seq A exon
GACCATAGGACCCTGGACCTCTCCAGTGAAATGTCCTGCACCATGAACACCAACAAGCTGGAAGAAAATAGTCCTGAAGAAGATACAGGGAAATTCGAGTGGAAACCCAAG
Seq C2 exon
GTCAAAGATGAATTCAAAGACATTTCCATATACTTCTCCAAAGAAGAATGGGCAGAGATGGGAGAGTGGGAGAAAATTCGCTATAGAAATGTGAAAAGGAACTATAAAATGCTGATTTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051977-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.815 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAGAGGGACGAACGC
R:
TCAGCATTTTATAGTTCCTTTTCACA
Band lengths:
220-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types