RnoEX0069382 @ rn6
Exon Skipping
Gene
ENSRNOG00000021493 | Prdm9
Description
PR/SET domain 9 [Source:RGD Symbol;Acc:1305247]
Coordinates
chr1:57553542-57555048:-
Coord C1 exon
chr1:57554944-57555048
Coord A exon
chr1:57553962-57554072
Coord C2 exon
chr1:57553542-57553665
Length
111 bp
Sequences
Splice sites
3' ss Seq
AGTTAGTTCTTCATCCATAGGAC
3' ss Score
6.55
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
CTCCTCAGAAGGACGAACGGCGGCGGTGGCTGCAGAGCCACAGGATTCTGGACCATGAGTACAGGCGAAACCTTCAAGACCAGCGAGACTTTCTAGGCTCAGCCC
Seq A exon
GACCATAGGACCCTGATCTTCTCCAGGGAAATGTCCCGCACCATGAACACCAACAAGCCGGAAGAGAATAGTACTGAAGGAGATGCAGGGAAACTCGAGTGGAAACCCAAG
Seq C2 exon
GTCAAAGATGAGTTCAAAGACATTTCCATATACTTCTCCAAAGAAGAATGGGCAGAGATGGGAGAGTGGGAGAAAATTCGCTATAGAAATGTGAAAAGGAACTATAAAATGCTGATTTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021493_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.889 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGAAGGACGAACGGC
R:
TCAGCATTTTATAGTTCCTTTTCACA
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]