MmuEX6075344 @ mm9
Exon Skipping
Gene
ENSMUSG00000051977 | Prdm9
Description
PR domain containing 9 [Source:MGI Symbol;Acc:MGI:2384854]
Coordinates
chr17:15694265-15699486:-
Coord C1 exon
chr17:15699379-15699486
Coord A exon
chr17:15695987-15696036
Coord C2 exon
chr17:15694265-15694421
Length
50 bp
Sequences
Splice sites
3' ss Seq
TGATTTCCTATCCCTTTCAGTCA
3' ss Score
8.04
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTCTCAGAGCCCCTAGACCAGCTTTCATGTGTTACCAAAGGCAAGCAATGAAACCCCAAATAAATGACAGTGAGGATTCTGATGAAGAGTGGACACCTAAGCAACAAG
Seq A exon
TCAGTCCTCCTTGGGTGCCTTTCCGGGTGAAGCACAGTAAACAGCAGAAG
Seq C2 exon
GAATCATCTAGAATGCCATTTAGTGGTGAATCTAATGTGAAGGAAGGGTCTGGAATAGAAAATTTGCTGAATACAAGTGGCTCAGAACACGTCCAGAAACCAGTGTCCTCCCTTGAAGAAGGAAATACCTCTGGACAGCACTCTGGGAAAAAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051977-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=0.494 C2=0.970
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF095145=SSXRD=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGGACACCTAAGCAACA
R:
AGGACACTGGTTTCTGGACGT
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: