MmuEX6075344 @ mm10
Exon Skipping
Gene
ENSMUSG00000051977 | Prdm9
Description
PR domain containing 9 [Source:MGI Symbol;Acc:MGI:2384854]
Coordinates
chr17:15557547-15562522:-
Coord C1 exon
chr17:15562415-15562522
Coord A exon
chr17:15559023-15559072
Coord C2 exon
chr17:15557547-15557574
Length
50 bp
Sequences
Splice sites
3' ss Seq
TGATTTCCTATCCCTTTCAGTCA
3' ss Score
8.04
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTCTCAGAGCCCCTAGACCAGCTTTCATGTGTTACCAAAGGCAAGCAATGAAACCCCAAATAAATGACAGTGAGGATTCTGATGAAGAGTGGACACCTAAGCAACAAG
Seq A exon
TCAGTCCTCCTTGGGTGCCTTTCCGGGTGAAGCACAGTAAACAGCAGAAG
Seq C2 exon
ATACTCTACACATTAACTAAAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051977-'5-9,'5-5,6-9=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=0.353 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types