MmuEX6075451 @ mm10
Exon Skipping
Gene
ENSMUSG00000061544 | Zfp229
Description
zinc finger protein 229 [Source:MGI Symbol;Acc:MGI:2679295]
Coordinates
chr17:21739435-21743957:+
Coord C1 exon
chr17:21739435-21739512
Coord A exon
chr17:21742496-21742622
Coord C2 exon
chr17:21743859-21743957
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGTAAACATTTTCATTGTAGGGT
3' ss Score
5.09
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTACAAAAGTACAAGAAGAGAAAAGTCAGAAAAGGACAATAGGGAGAAATGGCTGGTTCTCCGGTAAATACATTCCAG
Seq A exon
GGTCTGTTGACATTCCGAGATGTGGCTGTGGACTTCTCCCAGGAGGAGTGGGAATGCCTGGACTCTGCTCAGAGGGCTTTGTACATTGGTGTAATGTTAGAGAATTATAGCAACCTGGTCTCTGTGG
Seq C2 exon
GTATTATTGTGTGCAAGGCAGACCTGGTCCCCCATCTGGAGCAAATCTATATACCCTGGAACGTGAAGATAAAAGAGATGGTGGCTAAACCAGGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061544-'9-19,'9-18,12-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGTACAAGAAGAGAAAAGTCA
R:
ACCTGGTTTAGCCACCATCTCT
Band lengths:
171-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types