MmuEX6075451 @ mm9
Exon Skipping
Gene
ENSMUSG00000061544 | Zfp229
Description
zinc finger protein [Source:MGI Symbol;Acc:MGI:2679295]
Coordinates
chr17:21876402-21880924:+
Coord C1 exon
chr17:21876402-21876479
Coord A exon
chr17:21879463-21879589
Coord C2 exon
chr17:21880826-21880924
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGTAAACATTTTCATTGTAGGGT
3' ss Score
5.09
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTACAAAAGTACAAGAAGAGAAAAGTCAGAAAAGGACAATAGGGAGAAATGGCTGGTTCTCCGGTAAATACATTCCAG
Seq A exon
GGTCTGTTGACATTCCGAGATGTGGCTGTGGACTTCTCCCAGGAGGAGTGGGAATGCCTGGACTCTGCTCAGAGGGCTTTGTACATTGGTGTAATGTTAGAGAATTATAGCAACCTGGTCTCTGTGG
Seq C2 exon
GTATTATTGTGTGCAAGGCAGACCTGGTCCCCCATCTGGAGCAAATCTATATACCCTGGAACGTGAAGATAAAAGAGATGGTGGCTAAACCAGGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061544-'5-7,'5-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGTACAAGAAGAGAAAAGTCA
R:
ACCTGGTTTAGCCACCATCTCT
Band lengths:
171-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: