MmuEX6075452 @ mm9
Exon Skipping
Gene
ENSMUSG00000061544 | Zfp229
Description
zinc finger protein [Source:MGI Symbol;Acc:MGI:2679295]
Coordinates
chr17:21870691-21876479:+
Coord C1 exon
chr17:21870691-21870925
Coord A exon
chr17:21873025-21873088
Coord C2 exon
chr17:21876402-21876479
Length
64 bp
Sequences
Splice sites
3' ss Seq
AATCTCTTTCTCATATCCAGGAC
3' ss Score
8.99
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGTGGGACCAGAGTAGGCAACATATTCCCAAAAGCGGGAGAGGGCCTCAGCAAAACTCGCCTTTCCCTCAGAAATTTCCGGGGACACCTAGTGCAGAATCTGGGCCAAGGACACTGCCCAGGGTCTTGCGGAGACGTGAAAACTCCCGAGAGCCGCAGGTGCCGCGCGGGGCATCCTGGTAGAGTCAGCAGCGCGGCGGCGGAAACCGCAGCCCGGCGGCCCTGGAACCTCCCAG
Seq A exon
GACTCACTGATGAAGTGGAACAGCGAGTGCTGGATGGTGAAGAGAGAGAAGACAAAGGATCCAG
Seq C2 exon
GTACAAAAGTACAAGAAGAGAAAAGTCAGAAAAGGACAATAGGGAGAAATGGCTGGTTCTCCGGTAAATACATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061544-'1-3,'1-2,4-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCATCCTGGTAGAGTCAG
R:
CCGGAGAACCAGCCATTTCTC
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: