MmuEX6076818 @ mm10
Exon Skipping
Gene
ENSMUSG00000091586 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32506894-32520416:+
Coord C1 exon
chr17:32506894-32507092
Coord A exon
chr17:32517894-32518038
Coord C2 exon
chr17:32520363-32520416
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCAACCTTCTCCATCTCCAGGTC
3' ss Score
11.35
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GATGCTACAGCTGGGCCTGTCCTGGCTGGGACTGGGGCCTGGAGCTGCCTTCCCATGGCAACTTCTGCAGTTGGTTGGGGCCTCCTTGTTCCTGGCTCGAATTCTGACCTGGATTTGTGCCTTCTATGACAACTACTGCCGTCTCCGCTGCTTCCCCGAGCCCCCTTCGCGGCACTGGTTTTGGGGTCACATGAGCATG
Seq A exon
GTCAAGAACAACGAGGAAGGCCTGCAGTTGTTGACTGAAAGGAGCCACCAATTCCATGATGTCCACCTCTGTTGGATTGGGCCCTTCTACCCCATCCTGAGGCTTATCCACCCCAAGTTTATTGGCCCCATACTCCAGGCCTCAG
Seq C2 exon
CTGCGGTGGCCCCTAAGGAAATGATTTTCTATGGCTTCCTGAAGCCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586-'6-8,'6-5,11-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(10.4=21.2)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTACAGCTGGGCCTGTC
R:
CTTCAGGAAGCCATAGAAAATCAT
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types