MmuEX6076835 @ mm9
Exon Skipping
Gene
ENSMUSG00000059000 | Zfp799
Description
zinc finger protein 799 [Source:MGI Symbol;Acc:MGI:2443934]
Coordinates
chr17:32956289-32959145:-
Coord C1 exon
chr17:32959019-32959145
Coord A exon
chr17:32958723-32958783
Coord C2 exon
chr17:32956289-32958044
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGATCTGTATTTTAGGAA
3' ss Score
10.59
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GAGTCAGTGACCTTGGAGGATGTGGCTGTGAACTTCACCTTGGAAGAGTGGACTATGCTGAATGCATCCCAAAAGGAGCTCTACAAAGATGTGATGCAGGACACCTTGAGGAACCTGTCCTATATAG
Seq A exon
GAAACAAATGGGAACACCAAAATATTGAAAATGAGTATGAAACTCTCTGGAGAAAACTAAG
Seq C2 exon
TAGTCAGTTGTTGGAGAGACTCTGTGAATATACCGAAGGTCATCAGCGTGCAGAAATCTTTAACTGGACCCCAGAGTGTGCTGTGAGCCAGAAGTCATGTCCAGTTCCCCCATATGAAAGCCCTGTCTATGAAGAAGTAGTTATTGGCCATTTATCTGTGAATGTCTCCCCTCATCCTCACCCAGGACACAAACTGTATGCCATTCAGGAATATGGAAAAGAATTGTATAAACACAAAGAATCTGGGAACACCTCCATTTCTTCCACACCTTTTCAGAAGCAAAAAACAATTCGCACTGAGGAGAAACCTGAAACTAGTCACTGTAAGGAAGATTCCAGGTGTCTCCCATCCAGTCAGAACGATGGAAAGAGCTCCAGTGGAGAACCGCACTATGAATGTAAGCAGTGTGGGAAAGCATTCACTTCTTCTAGCTCTTTTCGTAGGCATGAAGAATATCACAGCCGAGAAAAATCCTATGTGTGTAAGCAGTGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059000-'0-1,'0-0,2-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.096
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.1),PF134511=zf-trcl=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCAGGACACCTTGAGGA
R:
TGGGGGAACTGGACATGACTT
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: