MmuEX6077406 @ mm10
Exon Skipping
Gene
ENSMUSG00000024393 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:MGI Symbol;Acc:MGI:1915467]
Coordinates
chr17:35160452-35161179:-
Coord C1 exon
chr17:35161028-35161179
Coord A exon
chr17:35160753-35160832
Coord C2 exon
chr17:35160452-35160594
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATTGTTGGGCCGTTTTGCAGATG
3' ss Score
7.52
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATTCTACAACTTGGAGGGACGGAGGTGGGCGTGGCCCTGATGACCTGGAGGGCCCGGACTCCAAACTTCATCATGGCCATGATCCCCGGGGTGGGCTGCAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGGATGATGCCGCCCTTT
Seq A exon
ATGTATCCCCCATATCTCCCATTCCCTCCGCCCTATGGACCCCAGGGGCCTTATAGATACCCGACTCCTGATGGGCCCAG
Seq C2 exon
CCGTTTTCCCCGTGTGGCGGGCCCCCGGGGCTCAGGGCCACCAATGCGCCTTGTAGAGCCTGTGGGTCGGCCTTCTATTCTTAAAGAGGATAATCTTAAAGAGTTTGACCAACTGGACCAGGAAAATGATGATGGTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024393_MULTIEX2-7/12=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGGACTCCAAACTTCATC
R:
AGAATAGAAGGCCGACCCACA
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types