MmuEX6077406 @ mm9
Exon Skipping
Gene
ENSMUSG00000024393 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:MGI Symbol;Acc:MGI:1915467]
Coordinates
chr17:35297397-35298124:-
Coord C1 exon
chr17:35297973-35298124
Coord A exon
chr17:35297698-35297777
Coord C2 exon
chr17:35297397-35297539
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATTGTTGGGCCGTTTTGCAGATG
3' ss Score
7.52
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATTCTACAACTTGGAGGGACGGAGGTGGGCGTGGCCCTGATGACCTGGAGGGCCCGGACTCCAAACTTCATCATGGCCATGATCCCCGGGGTGGGCTGCAGCCTTCAGGCCCACCCCAGTTCCCTCCCTACCGCGGGATGATGCCGCCCTTT
Seq A exon
ATGTATCCCCCATATCTCCCATTCCCTCCGCCCTATGGACCCCAGGGGCCTTATAGATACCCGACTCCTGATGGGCCCAG
Seq C2 exon
CCGTTTTCCCCGTGTGGCGGGCCCCCGGGGCTCAGGGCCACCAATGCGCCTTGTAGAGCCTGTGGGTCGGCCTTCTATTCTTAAAGAGGATAATCTTAAAGAGTTTGACCAACTGGACCAGGAAAATGATGATGGTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024393-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGGACTCCAAACTTCATC
R:
AGAATAGAAGGCCGACCCACA
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: