MmuEX6077426 @ mm10
Exon Skipping
Gene
ENSMUSG00000024397 | Aif1
Description
allograft inflammatory factor 1 [Source:MGI Symbol;Acc:MGI:1343098]
Coordinates
chr17:35172285-35173275:-
Coord C1 exon
chr17:35173141-35173275
Coord A exon
chr17:35172515-35172689
Coord C2 exon
chr17:35172285-35172346
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGGGGTGCTGGTGTCAGCAGAAG
3' ss Score
2.17
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
GGCGCTAGGCTCAGCTCACCCCATTCCTGGAGCAGCCTGCAGACTTCATCCTCTCTCTTCCATCCCGGGGAAAGTCAGCCAGTCCTCCTCAGCTGCCTGTCTTAACCTGCATCATGAAGCCTGAGGAGATTTCAA
Seq A exon
AAGCTGATGTGGAAGTGATGCCTGGGAGTTAGCAAGGGAATGAGTGGAAAGGGGAAGTGTGAGAACGGTCCCAGAAGAGACTGGGGAGCTGGTGGAGAGAGGACCCAGCGGACAGACTGCCAGCCTAAGACAACCAGCGTCTGAGGAGCCATGAGCCAAAGCAGGGATTTGCAGG
Seq C2 exon
GAGGAAAAGCTTTTGGACTGCTGAAGGCCCAGCAGGAAGAGAGGCTGGAGGGGATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024397_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.236 C2=0.071
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134991=EF-hand_7=PU(8.9=38.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGGCTCAGCTCACCCC
R:
CTTGTTGATCCCCTCCAGCCT
Band lengths:
194-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types