MmuEX6077426 @ mm9
Exon Skipping
Gene
ENSMUSG00000024397 | Aif1
Description
allograft inflammatory factor 1 [Source:MGI Symbol;Acc:MGI:1343098]
Coordinates
chr17:35309230-35310223:-
Coord C1 exon
chr17:35310086-35310223
Coord A exon
chr17:35309460-35309634
Coord C2 exon
chr17:35309230-35309291
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGGGGTGCTGGTGTCAGCAGAAG
3' ss Score
2.17
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
CAGGGCGCTAGGCTCAGCTCACCCCATTCCTGGAGCAGCCTGCAGACTTCATCCTCTCTCTTCCATCCCGGGGAAAGTCAGCCAGTCCTCCTCAGCTGCCTGTCTTAACCTGCATCATGAAGCCTGAGGAGATTTCAA
Seq A exon
AAGCTGATGTGGAAGTGATGCCTGGGAGTTAGCAAGGGAATGAGTGGAAAGGGGAAGTGTGAGAACGGTCCCAGAAGAGACTGGGGAGCTGGTGGAGAGAGGACCCAGCGGACAGACTGCCAGCCTAAGACAACCAGCGTCTGAGGAGCCATGAGCCAAAGCAGGGATTTGCAGG
Seq C2 exon
GAGGAAAAGCTTTTGGACTGCTGAAGGCCCAGCAGGAAGAGAGGCTGGAGGGGATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024397-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=0.632 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134991=EF-hand_7=PU(8.9=38.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGGCTCAGCTCACCCC
R:
CTTGTTGATCCCCTCCAGCCT
Band lengths:
194-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: