MmuEX6077449 @ mm9
Exon Skipping
Gene
ENSMUSG00000079507 | H2-Q2
Description
histocompatibility 2, Q region locus 1 [Source:MGI Symbol;Acc:MGI:95928]
Coordinates
chr17:35457492-35458495:+
Coord C1 exon
chr17:35457492-35457570
Coord A exon
chr17:35457766-35458035
Coord C2 exon
chr17:35458220-35458495
Length
270 bp
Sequences
Splice sites
3' ss Seq
TCACCGCGCGCCGCCCCCAGGCT
3' ss Score
8.13
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ATTCCAGATGGGGCAATGGCACTGGGAAGGCTGCTCCTGCTGCTGGCAGCCGCCCTGACCCTGACCAAAACCGGAGCGG
Seq A exon
GCTCACACTCGCTGCGGTATTTCGAGACCTCGGTGTCCCGGCCCGGCTTCGGGAAGCCCCGGTTCATCTCTGTCGGCTACGTGGACGACACGCAGTTTGTGCGCTTCGACAGCGACGCGAAGAATCCGAGATATGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAACGGAACACACGGAGAGTCAAGGGCAGTGAGAAGAGATTCCAAGAGAGCCTGAGCACCCTGCTCAGCTACTACAACCAGAGCAAGGGCG
Seq C2 exon
GCATTCACACCTTCCAGAAGTTGTCTGGCTGTGATCTGGGGTCAGATGGGCGCCTTCAAAGCGGGTACCTGCAGTTCGCCTATGATGGCCTTGATTACATCGCCCTGAATGAAGACCTGGAAACCTGGACAGCAGCAGATGTGGCAGCTCAGGAAACCCGACGCAAGTGGGAGCAGGCTGGTGCTGCTGAGAAACACAGGACCTACCTGGAGGGCAAGTGCCTGATGTGGCTCCACAGATACCTGGAGCTCGGGAAGGAGATGCTGCTGCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079507-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.165 C2=0.065
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(50.3=98.9)
C2:
PF0012913=MHC_I=PD(49.2=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAGATGGGGCAATGGC
R:
ACTTGCCCTCCAGGTAGGTC
Band lengths:
298-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: