BtaEX6098697 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019386 | BOLA-NC
Description
Bos taurus non-classical MHC class I antigen (BOLA-NC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105616]
Coordinates
chr23:28357206-28358332:-
Coord C1 exon
chr23:28358262-28358332
Coord A exon
chr23:28357680-28357949
Coord C2 exon
chr23:28357206-28357481
Length
270 bp
Sequences
Splice sites
3' ss Seq
TCACCCCTCCCCGCTCTCAGGCC
3' ss Score
9.99
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTGCGTCATGGGGCCGCGAACCCTCCTCCTGCTCCTCTTGGGGGTCCTGGTCCCCCGAGACACACGGGCGG
Seq A exon
GCCCTCACTCCATGAGGTATTTCCTCACCGCCGTGTCCCGGCCCGGCCTCGGGGAGCCCCGCTTCATCACCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACCGTCCAGATCCGAGGATGGAGCCGCGGGCGCGGTGGGTGGAGGATGAGGGGCCGGAGTATTGGGATCAAGAGACGCGGATACAAAAGGAAAACACACAGACTTTCCGAGCAAACCTGAACACCCTACTCGGCTACTACAACCAGAGCGAGGCCG
Seq C2 exon
GGTCTCACACCATCCAGTGGATGCACGGCTGCGGCGTGGGGTCGGACGGGCGCCTCCTCCGCGGGTATAATCAGCTCGCCTATGACGGCAAAGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACAGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCAGGTGAGGCGGAGAGATTCAGGAACTACCTGGAGGGCGAGTGCGTGAAGTTGCTCCGCAGACACCTGGAGAACGGGAAGGACACGCTGCTGCGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019386-'0-4,'0-1,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.242 C2=0.097
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(50.3=98.9)
C2:
PF0012913=MHC_I=PD(49.2=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCTGCTCCTCTTGGG
R:
CTTCCCGTTCTCCAGGTGTCT
Band lengths:
306-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]