MmuEX6077625 @ mm9
Exon Skipping
Gene
ENSMUSG00000024448 | H2-M10.1
Description
histocompatibility 2, M region locus 10.1 [Source:MGI Symbol;Acc:MGI:1276522]
Coordinates
chr17:36462000-36463100:-
Coord C1 exon
chr17:36463023-36463100
Coord A exon
chr17:36462513-36462782
Coord C2 exon
chr17:36462000-36462275
Length
270 bp
Sequences
Splice sites
3' ss Seq
TCAATGTGCACCACCCACAGGAT
3' ss Score
6.75
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGAGGATGAGGAACACTGGACCCTGCACACTCCTGCTCCTCCTGATGGTGGCCTTGGACCTGAACCACTATTGTGCAG
Seq A exon
GATCACACTGGCTGCAGACTTTCAACATTGTAATTTTGGAGCCTGGCATGTTGGAGCCCCGGTTCATCCAGGTCAGCTATGTAGACTCCATACAGTATCAGGGATTTGACAGCAAAGACCCATCTGCAGGGATGCAACCTCGAGCTGCATGGATAGAGCTGGAGCCACCTGAATATTGGGAAAAGGAGACATCAAGAGTTCTGGAATTGTCACAGGTAGAGAGACAAGTTCTTCGGTTAATGGTGAAAAAAAATGGACACAAAATGGATG
Seq C2 exon
GTTATCACACCCTGCAGGAAGTATATGGCTGCAATGTGGCTAATGATGGGAGCTTCCTCGGCGGTCACTACCGACTCACCTACTATGGCTATGATTACTTAACCCTAAATGAGGACCTGAGCTCTTGGACTGCAGAGGGCAAGGGAGCTCAACACGCGAAGAGCAGGTGGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACTTACCTGCAAGGGGAGTGTGTACAAAGGCTTCTTAGATACCTGGACCTTGGAAAGGAGACCTTGCTGTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024448-'0-1,'0-0,1-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.065
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(7.4=47.8)
A:
PF0012913=MHC_I=PU(50.3=98.9)
C2:
PF0012913=MHC_I=PD(49.2=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGGAACACTGGACCCT
R:
ACACTCCCCTTGCAGGTAAGT
Band lengths:
296-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: