MmuEX6077625 @ mm10
Exon Skipping
Gene
ENSMUSG00000024448 | H2-M10.1
Description
histocompatibility 2, M region locus 10.1 [Source:MGI Symbol;Acc:MGI:1276522]
Coordinates
chr17:36325055-36326155:-
Coord C1 exon
chr17:36326078-36326155
Coord A exon
chr17:36325568-36325837
Coord C2 exon
chr17:36325055-36325330
Length
270 bp
Sequences
Splice sites
3' ss Seq
TCAATGTGCACCACCCACAGGAT
3' ss Score
6.75
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGAGGATGAGGAACACTGGACCCTGCACACTCCTGCTCCTCCTGATGGTGGCCTTGGACCTGAACCACTATTGTGCAG
Seq A exon
GATCACACTGGCTGCAGACTTTCAACATTGTAATTTTGGAGCCTGGCATGTTGGAGCCCCGGTTCATCCAGGTCAGCTATGTAGACTCCATACAGTATCAGGGATTTGACAGCAAAGACCCATCTGCAGGGATGCAACCTCGAGCTGCATGGATAGAGCTGGAGCCACCTGAATATTGGGAAAAGGAGACATCAAGAGTTCTGGAATTGTCACAGGTAGAGAGACAAGTTCTTCGGTTAATGGTGAAAAAAAATGGACACAAAATGGATG
Seq C2 exon
GTTATCACACCCTGCAGGAAGTATATGGCTGCAATGTGGCTAATGATGGGAGCTTCCTCGGCGGTCACTACCGACTCACCTACTATGGCTATGATTACTTAACCCTAAATGAGGACCTGAGCTCTTGGACTGCAGAGGGCAAGGGAGCTCAACACGCGAAGAGCAGGTGGGAGGATGCAGGTGAAGCAAAACGGAGGAAGACTTACCTGCAAGGGGAGTGTGTACAAAGGCTTCTTAGATACCTGGACCTTGGAAAGGAGACCTTGCTGTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024448-'0-3,'0-1,1-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.059
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(7.4=47.8)
A:
PF0012913=MHC_I=PU(50.3=98.9)
C2:
PF0012913=MHC_I=PD(49.2=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGGAACACTGGACCCT
R:
ACACTCCCCTTGCAGGTAAGT
Band lengths:
296-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types