MmuEX6077604 @ mm10
Exon Skipping
Gene
ENSMUSG00000073407 | Gm6034
Description
predicted gene 6034 [Source:MGI Symbol;Acc:MGI:3646212]
Coordinates
chr17:36042961-36058645:+
Coord C1 exon
chr17:36042961-36043217
Coord A exon
chr17:36056353-36056456
Coord C2 exon
chr17:36057374-36058645
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTTCATCATAAAAGCCA
3' ss Score
3.71
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACTTTCCTCTTGAGGTCCTGAGAGTCCTTGCCTGCCAGGGATTTGCACAGACTCCCAAAGTGCCCAGAAAGCGCTGAAAGAGCTGTTCCTTCACTCCGTCTTCCCGAGACCTGTTCAGAGGCTGTCTGTGGAATCCAGGGGAGACTGCACACTGATCTCAGGCCCTCTCATGGGACACAGGACTCCTCCAGAAGGAAACATCCCAGGGCCCATGTTGGCAATAGCCAGCTTTTTGGTAGAATTCACTGGAGACCTAG
Seq A exon
CCACCACAGCTCCAATGATGATCACAGCTCCAAAGACAACCAGAGCAGCAATGATTACCATGTTAGAGTCGGTGGATGGAAGAGGCTCTGGGAAGGATATGAAG
Seq C2 exon
AGAACAAGGGAGCTGAGAGAGGGTTGTTCCTCAAACTACATCACTTACCTGAGTGTTGCTGAGCTTCCTCCAACAATCTGTGGAGTGTCTCCACGCATGTGCCCTCTAGGTAGGCCTTGTATTCCTCTGCCACTCCAGCCTCCTCCCATTTGTGTTGAGTGATCTGAGCCACTGCATCTGCTGCGGTCCAGGAGCTCAGGTCCTCGTTCAGGGTGATGTAATCGTGGCCATCATAGGCATGTTGATAGTGCCCGTGTAGGAACTGACCATCTGGTCCCACGTAGCATCCGTGCATATCCTGGATTGTGTGGGGACCTGGCCCGGGCATGGACACAGTCCCGCCCATGTTCAGGCACAGTCCTCAAACCTAAAGCAAAACTCAGGCACCCACAGCGGGTCCCATATCCCTTCAGTGAGTTCGTGAGGGGACATGACCTCTGACACTCGGGGGGGTGGGGGTCACTTACCGTCCTGACTCTGGTTATACAGGTGGAGTAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073407-'1-4,'1-2,2-4=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.571 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTCCTTCACTCCGTCT
R:
GGAGGAAGCTCAGCAACACTC
Band lengths:
248-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types