MmuEX6077604 @ mm9
Exon Skipping
Gene
ENSMUSG00000073407 | Gm6034
Description
predicted gene 6034 [Source:MGI Symbol;Acc:MGI:3646212]
Coordinates
chr17:36179906-36195590:+
Coord C1 exon
chr17:36179906-36180162
Coord A exon
chr17:36193298-36193401
Coord C2 exon
chr17:36194319-36195590
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTTCATCATAAAAGCCA
3' ss Score
3.71
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACTTTCCTCTTGAGGTCCTGAGAGTCCTTGCCTGCCAGGGATTTGCACAGACTCCCAAAGTGCCCAGAAAGCGCTGAAAGAGCTGTTCCTTCACTCCGTCTTCCCGAGACCTGTTCAGAGGCTGTCTGTGGAATCCAGGGGAGACTGCACACTGATCTCAGGCCCTCTCATGGGACACAGGACTCCTCCAGAAGGAAACATCCCAGGGCCCATGTTGGCAATAGCCAGCTTTTTGGTAGAATTCACTGGAGACCTAG
Seq A exon
CCACCACAGCTCCAATGATGATCACAGCTCCAAAGACAACCAGAGCAGCAATGATTACCATGTTAGAGTCGGTGGATGGAAGAGGCTCTGGGAAGGATATGAAG
Seq C2 exon
AGAACAAGGGAGCTGAGAGAGGGTTGTTCCTCAAACTACATCACTTACCTGAGTGTTGCTGAGCTTCCTCCAACAATCTGTGGAGTGTCTCCACGCATGTGCCCTCTAGGTAGGCCTTGTATTCCTCTGCCACTCCAGCCTCCTCCCATTTGTGTTGAGTGATCTGAGCCACTGCATCTGCTGCGGTCCAGGAGCTCAGGTCCTCGTTCAGGGTGATGTAATCGTGGCCATCATAGGCATGTTGATAGTGCCCGTGTAGGAACTGACCATCTGGTCCCACGTAGCATCCGTGCATATCCTGGATTGTGTGGGGACCTGGCCCGGGCATGGACACAGTCCCGCCCATGTTCAGGCACAGTCCTCAAACCTAAAGCAAAACTCAGGCACCCACAGCGGGTCCCATATCCCTTCAGTGAGTTCGTGAGGGGACATGACCTCTGACACTCGGGGGGGTGGGGGTCACTTACCGTCCTGACTCTGGTTATACAGGTGGAGTAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073407-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.571 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTCCTTCACTCCGTCT
R:
GGAGGAAGCTCAGCAACACTC
Band lengths:
248-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: