MmuEX6077887 @ mm10
Exon Skipping
Gene
ENSMUSG00000058626 | Capn11
Description
calpain 11 [Source:MGI Symbol;Acc:MGI:1352490]
Coordinates
chr17:45639623-45642636:-
Coord C1 exon
chr17:45642468-45642636
Coord A exon
chr17:45639803-45639886
Coord C2 exon
chr17:45639623-45639708
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTTCTTTTCTGTAGGTC
3' ss Score
11.47
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCTGATCGGATCCTACGGAGCGCTGTCTGGAGGCAGCACTTTGGAGGGTTTGGAAGATTTCACAGGCGGCGTAGCACAGTGCATTCCGCTCCAGAAGCCCCCTGGCAACATGCTAAGGCTCCTCAAGAAAGCCCTGGAGAAGTCTTCCCTCATGGGCTGTTCCATTGAA
Seq A exon
GTCACAGACAATAGTGAAGTAGAAACCATGACACATAACATGCTGGTGCGAGGACATGCTTATGCAGTGACTGGCCTAGAGGAT
Seq C2 exon
GTCTACTACAGAGACAAGTTGGAAACTCTAATTCGGATCCAAAATCCTTGGGGTCGGGTTGAATGGAATGGAGCCTGGAGTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058626-'12-11,'12-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.7=100)
A:
PF0064816=Peptidase_C2=FE(9.0=100)
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Skipping Isoform:
ENSMUST00000120717fB6983
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATTTCACAGGCGGCGTA
R:
AACCCGACCCCAAGGATTTTG
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types