HsaEX6047453 @ hg38
Exon Skipping
Gene
ENSG00000137225 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr6:44173218-44176338:+
Coord C1 exon
chr6:44173218-44173386
Coord A exon
chr6:44176068-44176151
Coord C2 exon
chr6:44176253-44176338
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCTCTGTTCTGTAGGTC
3' ss Score
11.45
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCTGAGTGGGTCCTATGAAGCATTGTCAGGGGGCAGTACCATGGAGGGCCTTGAGGACTTCACAGGAGGCGTGGCCCAGAGCTTCCAACTCCAGAGGCCCCCTCAGAACCTGCTCAGGCTCCTTAGGAAGGCCGTGGAGCGATCCTCCCTCATGGGTTGCTCCATTGAA
Seq A exon
GTCACCAGTGATAGTGAACTGGAATCCATGACTGACAAGATGCTGGTGAGAGGGCACGCTTACTCTGTGACTGGCCTTCAGGAT
Seq C2 exon
GTCCACTACAGAGGCAAAATGGAAACACTGATTCGGGTCCGGAATCCCTGGGGCCGGATTGAGTGGAATGGAGCTTGGAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137225-'12-12,'12-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.7=100)
A:
PF0064816=Peptidase_C2=FE(9.0=100)
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCATGGAGGGCCTTGAG
R:
GATTCCGGACCCGAATCAGTG
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains