DreEX6099397 @ danRer10
Exon Skipping
Gene
ENSDARG00000052748 | capn1b
Description
calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
Coordinates
chr22:26292024-26292538:-
Coord C1 exon
chr22:26292370-26292538
Coord A exon
chr22:26292196-26292279
Coord C2 exon
chr22:26292024-26292109
Length
84 bp
Sequences
Splice sites
3' ss Seq
AGTGTGTTTGTTTTTGATAGATC
3' ss Score
7.52
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCTAAATGGCTCATATGAAGCTCTGTCCGGAGGTTCCACCACCGAAGGCTTTGAGGACTTTACTGGCGGAGTTGCCGAAATGTATGAACTGCGCAGCGCTCCCAAAGACCTGCACCGCATCATTGCCAAAGCCCTGGAGAGAGGCTCACTGCTGGGCTGCTCCATTGAT
Seq A exon
ATCACCAGTGCCTTTGACATGGAGGCTGTGACCTTTAAGAAGCTAGTGAAGGGCCATGCTTACTCCGTCACAGCTCTCAGAGAG
Seq C2 exon
GTGAATTTCCGTGGCAACAGAGAGAGATTGATCCGTATCCGAAACCCTTGGGGACAAGTTGAATGGACTGGGGCTTGGAGCGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052748-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.7=100)
A:
PF0064816=Peptidase_C2=FE(9.0=100)
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAAATGTATGAACTGCGC
R:
GCCCCAGTCCATTCAACTTGT
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]