MmuEX6078358 @ mm9
Exon Skipping
Gene
ENSMUSG00000035580 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:52973867-53017391:+
Coord C1 exon
chr17:52973867-52974024
Coord A exon
chr17:52978380-52978587
Coord C2 exon
chr17:53017194-53017391
Length
208 bp
Sequences
Splice sites
3' ss Seq
GTTGCTCTGTCCCACCACAGGTG
3' ss Score
9.5
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
ATATTATTCTAAATTTCCGAACAACTTATGTCAGCAAGTCTGGCCAAGTTATCTTTGAAGCGAGATCCATTTGCATTCACTACGTCACCACCTGGTTCATCATTGATCTGATTGCTGCCTTGCCCTTTGACCTCCTGTATGCTTTCAATGTCACAGTG
Seq A exon
GTGTCCCTCGTTCATCTCCTGAAGACTGTTCGGCTGCTGCGTCTTTTGCGCCTCCTCCAGAAGCTGGACCGTTATTCTCAGCACAGTACCATCGTCCTCACCCTGCTCATGTCCATGTTTGCTCTCCTTGCACACTGGATGGCATGTATCTGGTATGTCATTGGAAAAATGGAGAGGGAGGACAACAGCCTTCTCAAGTGGGAAGTCG
Seq C2 exon
GTTGGCTTCATGAGCTGGGGAAGAGACTGGAATCTCCATATTATGGCAACAACACGCTGGGGGGCCCATCCATCCGAAGTGCCTATATTGCGGCCCTGTACTTCACTCTCAGCAGCCTCACAAGCGTTGGGTTTGGGAATGTGTCTGCTAACACAGATGCAGAGAAGATCTTCTCCATCTGCACCATGCTGATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035580-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(24.6=100)
A:
PF0052026=Ion_trans=FE(32.7=100)
C2:
PF0052026=Ion_trans=FE(31.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCAAGTCTGGCCAAGTT
R:
TCTGCATCTGTGTTAGCAGACAC
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: