MmuEX6078718 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57364067-57364540:-
Coord C1 exon
chr17:57364458-57364540
Coord A exon
chr17:57364276-57364366
Coord C2 exon
chr17:57364067-57364169
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTCTTCATACCCCATCCTAGTGC
3' ss Score
5.29
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
CATGGGGCAGTGGAAGATCCGAGCCTTTTACGAACATGCGCCGAAGCAGATCTTCTCCGCAGAGTTTGAGGTGAAGGAATACG
Seq A exon
TGCTGCCCAGTTTTGAGGTCCGGGTGGAGCCCACAGAGACATTTTATTACATCGATGACCCAAATGGCCTGGAAGTTTCCATCATAGCCAA
Seq C2 exon
GTTCCTGTACGGGAAAAACGTGGACGGGACAGCCTTCGTGATTTTTGGGGTCCAGGATGGCGATAAGAAGATTTCTCTGGCCCACTCCCTCACGCGCGTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.0=82.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGAAGATCCGAGCCTTT
R:
GAGGGAGTGGGCCAGAGAAAT
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: