RnoEX6038522 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9724058-9724516:+
Coord C1 exon
chr9:9724058-9724140
Coord A exon
chr9:9724239-9724329
Coord C2 exon
chr9:9724414-9724516
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATCTTCATACCCCATCCCAGTGC
3' ss Score
4.62
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CATGGGGCAGTGGAAGATCCGAGCCTTCTATGAACATGCACCAAAGCAGACCTTCTCTGCAGAGTTTGAGGTGAAGGAATACG
Seq A exon
TGCTGCCCAGTTTCGAAGTCCTGGTGGAGCCTACAGAGAAATTTTATTACATCGATGACCCAAAGGGCCTGGAAGTTTCCATCACAGCCAG
Seq C2 exon
ATTCCTGTATGGGAAGAACGTGGACGGGACAGCTTTCGTGATCTTTGGGGTCCAGGATGAGGATAAGAAGATTTCTCTGGCCCAGTCCCTCACCCGCGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.0=82.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGAAGATCCGAGCCTTC
R:
GAGGGACTGGGCCAGAGAAAT
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]