MmuEX6078720 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57363486-57364169:-
Coord C1 exon
chr17:57364067-57364169
Coord A exon
chr17:57363710-57363836
Coord C2 exon
chr17:57363486-57363601
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCTATCCTCTGCAGATT
3' ss Score
10.56
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTCCTGTACGGGAAAAACGTGGACGGGACAGCCTTCGTGATTTTTGGGGTCCAGGATGGCGATAAGAAGATTTCTCTGGCCCACTCCCTCACGCGCGTAGTG
Seq A exon
ATTGAGGATGGTGTGGGGGATGCAGTGCTGACCCGGAAGGTGCTGATGGAGGGGGTACGGCCTTCCAACGCCGACGCCCTGGTGGGGAAGTCCCTGTATGTCTCCGTCACTGTCATCCTGCACTCAG
Seq C2 exon
GTAGTGACATGGTAGAGGCAGAGCGCAGTGGGATCCCGATTGTCACTTCCCCGTACCAGATCCACTTCACCAAGACACCCAAATTCTTCAAGCCAGCCATGCCCTTTGACCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTACGGGAAAAACGTGG
R:
CATGAGGTCAAAGGGCATGGC
Band lengths:
218-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: