RnoEX6038520 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9724414-9725074:+
Coord C1 exon
chr9:9724414-9724516
Coord A exon
chr9:9724724-9724850
Coord C2 exon
chr9:9724959-9725074
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCTATCTTCTGCAGATC
3' ss Score
11.14
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTCCTGTATGGGAAGAACGTGGACGGGACAGCTTTCGTGATCTTTGGGGTCCAGGATGAGGATAAGAAGATTTCTCTGGCCCAGTCCCTCACCCGCGTGCTG
Seq A exon
ATCGAGGATGGTTCAGGGGAGGCAGTGCTCAGCCGAAAAGTGCTGATGGACGGGGTACGGCCCTCCAGCCCAGAAGCCCTAGTGGGGAAGTCCCTGTACGTCTCTGTCACTGTTATCCTGCACTCAG
Seq C2 exon
GTAGCGACATGGTAGAGGCAGAGCGCAGTGGGATCCCAATTGTCACTTCCCCGTACCAGATCCACTTCACCAAGACACCCAAATTCTTCAAGCCAGCCATGCCTTTCGACCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTATGGGAAGAACGTGG
R:
CATGAGGTCGAAAGGCATGGC
Band lengths:
218-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]