MmuEX6083436 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118017600-118020392:-
Coord C1 exon
chr12:118020188-118020392
Coord A exon
chr12:118018706-118018871
Coord C2 exon
chr12:118017600-118017702
Length
166 bp
Sequences
Splice sites
3' ss Seq
AATTATCTATCTATTTTTAGGAA
3' ss Score
10.01
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACAGTTCTGGTACACACACCAGAGACAACTCGTCTGAGGTATTTTACTGAGTTGCTACTTTGCAAAGGCAAACCGATAATGCTGGTTGGAAATGCAGGAGTGGGGAAAACGGTCTTTTTGAGCAACACCCTGGCAAGTCTCTCTGAGAACTACATAGTATCCTGTGTGCCTTTCAACTACTACACAACATCAGCAGCCCTGCAGA
Seq A exon
GAATTCTTGAAAAACCTCTAGAGAAAAAAGCTGGTCGTAACTATGGTCCAAAAGGAAATAAAAAACTGGTTTATTTCATTGATGATCTGAACATGCCTGAAGTGGATTTGTATGGCACTATCCAGCCTCATGCGCTGCTTCGGCAGCATATTGACTATGGGCACTG
Seq C2 exon
GTACGATCGACATAAAATTATGCTCAAGGAAATCCGCAACTGCCAGTACGTAGCCTGCATGAATCCCATGGTGGGCAGCTTCACAGTCAACCCAAGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'57-57,'57-56,58-57
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.1=100)
A:
PF127752=AAA_7=FE(20.3=100)
C2:
PF127752=AAA_7=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACACCAGAGACAACTCGT
R:
CAGGCTACGTACTGGCAGTTG
Band lengths:
250-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types