GgaEX6015773 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1070635-1074767:+
Coord C1 exon
chr18:1070635-1070842
Coord A exon
chr18:1073902-1074067
Coord C2 exon
chr18:1074665-1074767
Length
166 bp
Sequences
Splice sites
3' ss Seq
GCATCTCTTCCTCTGTACAGGTG
3' ss Score
9.39
5' ss Seq
TTGGTAGGA
5' ss Score
5
Exon sequences
Seq C1 exon
GCATGCCTGGTGCCCACGGCCGAGACGGTCCGGCTGCGGTACTTCATGGATCGGCTCCTGGAGCGCCAGCGCCCCGTGATGCTGGTGGGCAGTGCGGGCACTGGGAAGTCTGTGCTGGTGGGGGACAAACTCTCCTTGCTGGACACGGACGCATACGTGGTGAAGAAGGTCCCGTTCAACTACTACACCACCTCTGCCATGCTGCAAG
Seq A exon
GTGTGCTTGAGAAGCCTCTAGAGAAAAAGGCTGGCAGAAATTATGGCCCTCCAGGCACCAAGAAGCTCATCTACTTCATCGATGACATGAACATGCCAGCAGTGGATGCATATGGGACGGTGCAGCCCCATACGCTCATCAGGCAGCACCTGGACTATGGGCATTG
Seq C2 exon
GTATGACAGGACCAAGCTGTCACTGAAGGAGATCACAAACGTGCAGTATGTGTCGTGCATGAACCCAACAGCGGGGAGCTTCACCATCAACCCACGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'43-44,'43-43,45-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.4=100)
A:
PF127752=AAA_7=FE(20.2=100)
C2:
PF127752=AAA_7=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGTACTTCATGGATCGG
R:
TTGGGTTCATGCACGACACAT
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]