MmuEX0015114 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65803935-65818711:-
Coord C1 exon
chr11:65818504-65818711
Coord A exon
chr11:65806206-65806371
Coord C2 exon
chr11:65803935-65804037
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTAACTGGATCTCTCCTCAGCTG
3' ss Score
6.43
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCTTGTTTGGTACACACAAGTGAGACCATCCGGGTGTGCTACTTCATGGAGCGGCTCATGCAATGGAGGCGGCCGGTTATGCTGGTTGGCCCTGCAGGCTCAGGCAAGTCTGTGCTGGTGGGAGCAAAGCTGTCCAGCCTTAACCCTGAGGAATACATGGTGAAAAATGTGCCCTTCAACTACTATACTACGTCAGCAATGCTGCAAG
Seq A exon
CTGTCTTGGAGAAACCTCTAGAAAAGAAAGCTGGCAGGAATTATGGCCCTCCAGGCAACAGGAAACTCATCTATTTCATCGATGACATGAATATGCCCGAGGTGGATGCCTATGGCACAGTACAGCCCCACACTGTCATCAGGCAGCACCTAGACTATGGCCACTG
Seq C2 exon
GTATGATCGGAACAAGCTGTCTCTGAAGGAGATCATGAATGTACAATACATCTCCTGTATGAACCCCACTGCAGGCAGCTTTACCATCAACCCAAGGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'41-42,'41-41,42-42
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(24.8=98.5)
A:
PF127752=AAA_7=FE(20.2=100)
C2:
PF127752=AAA_7=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTGCTACTTCATGGAGC
R:
TGCAGTGGGGTTCATACAGGA
Band lengths:
250-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: