MmuEX0015115 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65803217-65806371:-
Coord C1 exon
chr11:65806206-65806371
Coord A exon
chr11:65803935-65804037
Coord C2 exon
chr11:65803217-65803456
Length
103 bp
Sequences
Splice sites
3' ss Seq
ACTGGAGGCCTCTATTTCAGGTA
3' ss Score
5.35
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGTCTTGGAGAAACCTCTAGAAAAGAAAGCTGGCAGGAATTATGGCCCTCCAGGCAACAGGAAACTCATCTATTTCATCGATGACATGAATATGCCCGAGGTGGATGCCTATGGCACAGTACAGCCCCACACTGTCATCAGGCAGCACCTAGACTATGGCCACTG
Seq A exon
GTATGATCGGAACAAGCTGTCTCTGAAGGAGATCATGAATGTACAATACATCTCCTGTATGAACCCCACTGCAGGCAGCTTTACCATCAACCCAAGGCTTCAG
Seq C2 exon
CGCCACTTCAGCGTGTTTGCCCTCTGCTTCCCAGGAGCTGATGCCCTCTCTTCCATCTATAGCACCATCTTGACCCATCATCTGAAGTTTGGAAACTTTCCCACCACCCTGCAGAAATCCATCCCTCCTCTGATAAACCTGGCTGTCACCTTCCATCAGAAAATTGCCACCACGTTTCTGCCCACAGCAATCAAATTTCACTACATCTTCAATCTCAGAGATTTTGCCAATATTTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'42-43,'42-42,43-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.2=100)
A:
PF127752=AAA_7=FE(12.5=100)
C2:
PF127752=AAA_7=FE(29.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGGAATTATGGCCCTC
R:
ATGGATTTCTGCAGGGTGGTG
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: